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Core/Pan Protein Fasta
About
Pairwise sequence alignment
Enter type :
PROTEIN
DNA
Sequences A :
e.g.,
Example
Sequences B :
e.g.,
Example
Output format:
EMBOSS multiple
FASTA multiple
MSF multiple
SRS multiple
EMBOSS pairwise
FASTA pairwise
FASTA pairwise marking differences
FASTA pairwise differences only
FASTA pairwise simple
FASTA pairwise simple with comments
SRS pairwise
Pairwise scores only
Matrix:
End Gap Penalty:
true
false
Gap open:
100
50
25
20
15
10
5
1
End Gap Open:
100
50
25
20
15
10
5
1
Gap Extend:
0.0005
0.001
0.05
0.1
0.2
0.4
0.5
0.6
0.8
1.0
5.0
10.0
End Gap Extend:
0.0005
0.001
0.05
0.1
0.2
0.4
0.5
0.6
0.8
1.0
5.0
10.0
Run
Result:
1
