Welcome to Marine fish database

Customized development of marine fish database comprehensive website. Phase I aims to integrate marine fish genome information (basic reference genome), RNA-Seq data resource data.

89
Genome
120
Organs
3017
RNA-Seq
2319293
Genes
e.g.,  GO:0001568, K05692, PF00022.19

Navigation

Genome

This module is a tool designed for analyzing and interpreting species data.

Pan/Core GeneSet

This module is a tool designed to view pan/core geneset.

RNA-Seq Dataset

This module is a tool designed to view RNA-Seq dataset.

Synteny

This module is a tool designed for analyzing and interpreting synteny data.

Search

This module is a tool designed for search and seq fetch species‘ gene info.

BLAST

BLAST (basic local alignment search tool) is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of proteins or the nucleotides of DNA and/or RNA sequences.

Tools

GO Enrichment

GO enrichment analysis is to classify differential genes according to GO, and conduct significance analysis, misjudgment rate analysis and enrichment analysis based on discrete distribution on the classification results.
KEGG Enrichment

KEGG Enrichment Analysis is often used to study gene function and screen key genes in differential gene sets.
Multiple sequence alignment (Muscle)

MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW.

Gene prediction (GeneWise)

GeneWise compares a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors.
Primer

Primer3 is a widely used program for designing PCR primers (PCR = "Polymerase Chain Reaction"). PCR is an essential and ubiquitous tool in genetics and molecular biology.

Genome alignment (Lastz)

This document describes installation and usage of the LASTZ sequence alignment program. LASTZ is a drop-in replacement for BLASTZ, and is backward compatible with BLASTZ's command-line syntax.

Release Notes
  • Marine fish database is available online on Nov 2024.
  • Marine fish database is development on Mar 2024.
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